Publications

Found 72 results
[ Type(Desc)] Year
Book Chapter
J Pajak, G Arya, and DE Smith. "Biophysics of DNA Packaging." In Encyclopedia of Virology. 4th ed. Elsevier 2019.
Conference Paper
K Holzworth, G Williams, B Arman, Z Guan, G Arya, and S Nemat-Nasser. "Polyurea with hybrid polymer grafted nanoparticles: A parametric study." In ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE), 719-720. Vol. 8. 2012.
Journal Article
T-Y Tang, and G Arya. "Anisotropic Three-Particle Interactions between Spherical Polymer-Grafted Nanoparticles in a Polymer Matrix." Macromolecules 50, no. 3 (2017): 1167-1183.
CR Murthy, B Gao, AR Tao, and G Arya. "Automated quantitative image analysis of nanoparticle assembly." Nanoscale 7, no. 21 (2015): 9793-9805.
H Kabra, Y Hwang, HL Lim, M Kar, G Arya, and S Varghese. "Biomimetic Material-Assisted Delivery of Human Embryonic Stem Cell Derivatives for Enhanced In Vivo Survival and Engraftment." Acs Biomaterials Science & Engineering 1, no. 1 (2015): 7-12.
D Meluzzi, DE Smith, and G Arya. "Biophysics of knotting." Annual Review of Biophysics 39 (2010): 349-366.
AE Marras, Z Shi, MG Lindell, RA Patton, C-M Huang, L Zhou, H-J Su, G Arya, and CE Castro. "Cation-Activated Avidity for Rapid Reconfiguration of DNA Nanodevices." Acs Nano 12, no. 9 (2018): 9484-9494.
G Arya. "Chain Stiffness and Attachment-Dependent Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 114, no. 48 (2010): 15886-15896.
S-W Hsu, AL Rodarte, M Som, G Arya, and AR Tao. "Colloidal Plasmonic Nanocomposites: From Fabrication to Optical Function." Chemical Reviews 118, no. 6 (2018): 3100-3120.
D Meluzzi, and G Arya. "Computational Approaches for Inferring 3D Conformations of Chromatin from Chromosome Conformation Capture Data." Methods (San Diego, Calif.) (2019).
D Meluzzi, KE Olson, GF Dolan, G Arya, and UF Muller. "Computational prediction of efficient splice sites for trans-splicing ribozymes." Rna (New York, N.Y.) 18, no. 3 (2012): 590-602.
KL Gurunatha, S Marvi, G Arya, and AR Tao. "Computationally Guided Assembly of Oriented Nanocubes by Modulating Grafted Polymer–Surface Interactions." Nano Letters 15, no. 11 (2015): 7377-7382.
Z Shi, CE Castro, and G Arya. "Conformational Dynamics of Mechanically Compliant DNA Nanostructures from Coarse-Grained Molecular Dynamics Simulations." Acs Nano 11, no. 5 (2017): 4617-4630.
G Arya, H-C Chang, and EJ Maginn. "A critical comparison of equilibrium, non-equilibrium and boundary-driven molecular dynamics techniques for studying transport in microporous materials." The Journal of Chemical Physics 115, no. 17 (2001): 8112-8124.
M DeLuca, Z Shi, CE Castro, and G Arya. "Dynamic DNA nanotechnology: toward functional nanoscale devices." Nanoscale Horizons (2019).
HL Lim, JC Chuang, T Tran, A Aung, G Arya, and S Varghese. "Dynamic Electromechanical Hydrogel Matrices for Stem Cell Culture." Advanced Functional Materials 21, no. 1 (2011): 55-63.
I V. Dobrovolskaia, and G Arya. "Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions." Biophysical Journal 103, no. 5 (2012): 989-998.
CR Murthy, B Gao, AR Tao, and G Arya. "Dynamics of nanoparticle assembly from disjointed images of nanoparticle-polymer composites." Physical Review. E 93, no. 2 (2016).
G Arya, EJ Maginn, and H-C Chang. "Effect of the Surface Energy Barrier on Sorbate Diffusion in AlPO4-5." Journal of Physical Chemistry B 105, no. 14 (2001): 2725-2735.
D Meluzzi, and G Arya. "Efficient estimation of contact probabilities from inter-bead distance distributions in simulated polymer chains." Journal of Physics. Condensed Matter : an Institute of Physics Journal 27, no. 6 (2015): 064120.
G Arya, and T Schlick. "Efficient global biopolymer sampling with end-transfer configurational bias Monte Carlo." The Journal of Chemical Physics 126, no. 4 (2007): 044107.
G Arya, EJ Maginn, and H-C Chang. "Efficient viscosity estimation from molecular dynamics simulation via momentum impulse relaxation." The Journal of Chemical Physics 113, no. 6 (2000): 2079-2087.
G Arya. "Energetic and Entropic Forces Governing the Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 113, no. 48 (2009): 15760-15770.
R Ayala, C Zhang, D Yang, Y Hwang, A Aung, SS Shroff, FT Arce, R Lal, G Arya, and S Varghese. "Engineering the cell-material interface for controlling stem cell adhesion, migration, and differentiation." Biomaterials 32, no. 15 (2011): 3700-3711.
AD Migliori, N Keller, TI Alam, M Mahalingam, VB Rao, G Arya, and DE Smith. "Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor." Nature Communications 5 (2014).

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