Publications

Found 93 results
[ Type(Desc)] Year
Book Chapter
J Pajak, G Arya, and DE Smith. "Biophysics of DNA Packaging." In Encyclopedia of Virology (Fourth Edition), 160-166. 4th ed. Elsevier 2021.
Conference Paper
K Holzworth, G Williams, B Arman, Z Guan, G Arya, and S Nemat-Nasser. "Polyurea with hybrid polymer grafted nanoparticles: A parametric study." In ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE), 719-720. Vol. 8. 2012.
Journal Article
BH-J Lee, and G Arya. "Analytical van der Waals interaction potential for faceted nanoparticles." Nanoscale Horizons 5, no. 12 (2020): 1628-1642.
J Ding, JL Niedziela, D Bansal, J Wang, X He, AF May, G Ehlers, DL Abernathy, A Said, A Alatas et al. "Anharmonic lattice dynamics and superionic transition in AgCrSe2." Proceedings of the National Academy of Sciences of the United States of America 117, no. 8 (2020): 201913916.
T-Y Tang, and G Arya. "Anisotropic Three-Particle Interactions between Spherical Polymer-Grafted Nanoparticles in a Polymer Matrix." Macromolecules 50, no. 3 (2017): 1167-1183.
BH-J Lee, and G Arya. "Assembly mechanism of surface-functionalized nanocubes." Nanoscale 14, no. 10 (2022): 3917-3928.
J Pajak, E Dill, E Reyes-Aldrete, MA White, BA Kelch, PJ Jardine, G Arya, and MC Morais. "Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor." Nucleic Acids Res 49, no. 11 (2021): 6474-6488.
J Wang, J Ding, O Delaire, and G Arya. "Atomistic Mechanisms Underlying Non-Arrhenius Ion Transport in Superionic Conductor AgCrSe2." ACS Applied Energy Materials 4, no. 7 (2021): 7157-7167.
CR Murthy, B Gao, AR Tao, and G Arya. "Automated quantitative image analysis of nanoparticle assembly." Nanoscale 7, no. 21 (2015): 9793-9805.
S Sensale, P Sharma, and G Arya. "Binding kinetics of harmonically confined random walkers." Physical Review. E 105, no. 4 (2022).
H Kabra, Y Hwang, HL Lim, M Kar, G Arya, and S Varghese. "Biomimetic Material-Assisted Delivery of Human Embryonic Stem Cell Derivatives for Enhanced In Vivo Survival and Engraftment." Acs Biomaterials Science & Engineering 1, no. 1 (2015): 7-12.
D Meluzzi, DE Smith, and G Arya. "Biophysics of knotting." Annual Review of Biophysics 39 (2010): 349-366.
C Zhou, D Yang, S Sensale, P Sharma, D Wang, L Yu, G Arya, Y Ke, and P Wang. "A bistable and reconfigurable molecular system with encodable bonds." Science Advances 8, no. 46 (2022).
AE Marras, Z Shi, MG Lindell, RA Patton, C-M Huang, L Zhou, H-J Su, G Arya, and CE Castro. "Cation-Activated Avidity for Rapid Reconfiguration of DNA Nanodevices." Acs Nano 12, no. 9 (2018): 9484-9494.
G Arya. "Chain Stiffness and Attachment-Dependent Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 114, no. 48 (2010): 15886-15896.
S-W Hsu, AL Rodarte, M Som, G Arya, and AR Tao. "Colloidal Plasmonic Nanocomposites: From Fabrication to Optical Function." Chemical Reviews 118, no. 6 (2018): 3100-3120.
D Meluzzi, and G Arya. "Computational Approaches for Inferring 3D Conformations of Chromatin from Chromosome Conformation Capture Data." Methods (San Diego, Calif.) 181-182 (2020): 24-34.
D Meluzzi, KE Olson, GF Dolan, G Arya, and UF Muller. "Computational prediction of efficient splice sites for trans-splicing ribozymes." Rna (New York, N.Y.) 18, no. 3 (2012): 590-602.
KL Gurunatha, S Marvi, G Arya, and AR Tao. "Computationally Guided Assembly of Oriented Nanocubes by Modulating Grafted Polymer–Surface Interactions." Nano Letters 15, no. 11 (2015): 7377-7382.
Z Shi, CE Castro, and G Arya. "Conformational Dynamics of Mechanically Compliant DNA Nanostructures from Coarse-Grained Molecular Dynamics Simulations." Acs Nano 11, no. 5 (2017): 4617-4630.
G Arya, H-C Chang, and EJ Maginn. "A critical comparison of equilibrium, non-equilibrium and boundary-driven molecular dynamics techniques for studying transport in microporous materials." The Journal of Chemical Physics 115, no. 17 (2001): 8112-8124.
Q Tang, S Sensale, C Bond, A Qiao, S Hugelier, A Arab, G Arya, and M Lakadamyali. "Detyrosination enrichment on microtubule subsets is established by the interplay between a stochastically-acting enzyme and microtubule stability." (2022).
M DeLuca, Z Shi, CE Castro, and G Arya. "Dynamic DNA nanotechnology: toward functional nanoscale devices." Nanoscale Horizons 5, no. 2 (2020): 182-201.
HL Lim, JC Chuang, T Tran, A Aung, G Arya, and S Varghese. "Dynamic Electromechanical Hydrogel Matrices for Stem Cell Culture." Advanced Functional Materials 21, no. 1 (2011): 55-63.
I V. Dobrovolskaia, and G Arya. "Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions." Biophysical Journal 103, no. 5 (2012): 989-998.

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