Publications
Biophysics of DNA Packaging." In Encyclopedia of Virology (Fourth Edition), 160-166. 4th ed. Elsevier 2021.
"Polyurea with hybrid polymer grafted nanoparticles: A parametric study." In ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE), 719-720. Vol. 8. 2012.
"Analytical van der Waals interaction potential for faceted nanoparticles." Nanoscale Horizons 5, no. 12 (2020): 1628-1642.
"Anharmonic lattice dynamics and superionic transition in AgCrSe2." Proceedings of the National Academy of Sciences of the United States of America 117, no. 8 (2020): 201913916.
"Anisotropic Three-Particle Interactions between Spherical Polymer-Grafted Nanoparticles in a Polymer Matrix." Macromolecules 50, no. 3 (2017): 1167-1183.
"Assembly mechanism of surface-functionalized nanocubes." Nanoscale 14, no. 10 (2022): 3917-3928.
"Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor." Nucleic Acids Res 49, no. 11 (2021): 6474-6488.
"Atomistic Mechanisms Underlying Non-Arrhenius Ion Transport in Superionic Conductor AgCrSe2." ACS Applied Energy Materials 4, no. 7 (2021): 7157-7167.
"Automated quantitative image analysis of nanoparticle assembly." Nanoscale 7, no. 21 (2015): 9793-9805.
"Binding kinetics of harmonically confined random walkers." Physical Review. E 105, no. 4 (2022).
"Biomimetic Material-Assisted Delivery of Human Embryonic Stem Cell Derivatives for Enhanced In Vivo Survival and Engraftment." Acs Biomaterials Science & Engineering 1, no. 1 (2015): 7-12.
"Biophysics of knotting." Annual Review of Biophysics 39 (2010): 349-366.
"Cation-Activated Avidity for Rapid Reconfiguration of DNA Nanodevices." Acs Nano 12, no. 9 (2018): 9484-9494.
"Chain Stiffness and Attachment-Dependent Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 114, no. 48 (2010): 15886-15896.
"Colloidal Plasmonic Nanocomposites: From Fabrication to Optical Function." Chemical Reviews 118, no. 6 (2018): 3100-3120.
"Computational Approaches for Inferring 3D Conformations of Chromatin from Chromosome Conformation Capture Data." Methods (San Diego, Calif.) 181-182 (2020): 24-34.
"Computational prediction of efficient splice sites for trans-splicing ribozymes." Rna (New York, N.Y.) 18, no. 3 (2012): 590-602.
"Computationally Guided Assembly of Oriented Nanocubes by Modulating Grafted Polymer–Surface Interactions." Nano Letters 15, no. 11 (2015): 7377-7382.
"Conformational Dynamics of Mechanically Compliant DNA Nanostructures from Coarse-Grained Molecular Dynamics Simulations." Acs Nano 11, no. 5 (2017): 4617-4630.
"A critical comparison of equilibrium, non-equilibrium and boundary-driven molecular dynamics techniques for studying transport in microporous materials." The Journal of Chemical Physics 115, no. 17 (2001): 8112-8124.
"Dynamic DNA nanotechnology: toward functional nanoscale devices." Nanoscale Horizons 5, no. 2 (2020): 182-201.
"Dynamic Electromechanical Hydrogel Matrices for Stem Cell Culture." Advanced Functional Materials 21, no. 1 (2011): 55-63.
"Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions." Biophysical Journal 103, no. 5 (2012): 989-998.
"Dynamics of nanoparticle assembly from disjointed images of nanoparticle-polymer composites." Physical Review. E 93, no. 2 (2016).
"Effect of the Surface Energy Barrier on Sorbate Diffusion in AlPO4-5." Journal of Physical Chemistry B 105, no. 14 (2001): 2725-2735.
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