|Title||Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor.|
|Publication Type||Journal Article|
|Year of Publication||2021|
|Authors||J Pajak, E Dill, E Reyes-Aldrete, MA White, BA Kelch, PJ Jardine, G Arya, and MC Morais|
|Journal||Nucleic Acids Res|
|Pagination||6474 - 6488|
Double-stranded DNA viruses package their genomes into pre-assembled capsids using virally-encoded ASCE ATPase ring motors. We present the first atomic-resolution crystal structure of a multimeric ring form of a viral dsDNA packaging motor, the ATPase of the asccφ28 phage, and characterize its atomic-level dynamics via long timescale molecular dynamics simulations. Based on these results, and previous single-molecule data and cryo-EM reconstruction of the homologous φ29 motor, we propose an overall packaging model that is driven by helical-to-planar transitions of the ring motor. These transitions are coordinated by inter-subunit interactions that regulate catalytic and force-generating events. Stepwise ATP binding to individual subunits increase their affinity for the helical DNA phosphate backbone, resulting in distortion away from the planar ring towards a helical configuration, inducing mechanical strain. Subsequent sequential hydrolysis events alleviate the accumulated mechanical strain, allowing a stepwise return of the motor to the planar conformation, translocating DNA in the process. This type of helical-to-planar mechanism could serve as a general framework for ring ATPases.
|Short Title||Nucleic Acids Res|