Publications

Found 90 results
Type [ Year(Asc)]
2022
BH-J Lee, and G Arya. "Assembly mechanism of surface-functionalized nanocubes." Nanoscale 14, no. 10 (2022): 3917-3928.
S Sensale, P Sharma, and G Arya. "Binding kinetics of harmonically confined random walkers." Physical Review. E 105, no. 4 (2022).
J Pajak, and G Arya. "Molecular dynamics of DNA translocation by FtsK." Nucleic Acids Research (2022).
J Pajak, and G Arya. "Molecular Dynamics of DNA Translocation by FtsK." (2022).
V Simões, BK Cizubu, L Harley, Y Zhou, J Pajak, NA Snyder, J Bouvette, MJ Borgnia, G Arya, A Bartesaghi et al. "Redox-sensitive E2 Rad6 controls cellular response to oxidative stress via K63-linked ubiquitination of ribosomes." Cell Reports 39, no. 8 (2022): 110860.
Y Zhou, T-Y Tang, BH-J Lee, and G Arya. "Tunable Orientation and Assembly of Polymer-Grafted Nanocubes at Fluid–Fluid Interfaces." Acs Nano (2022).
2021
J Pajak, E Dill, E Reyes-Aldrete, MA White, BA Kelch, PJ Jardine, G Arya, and MC Morais. "Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor." Nucleic Acids Res 49, no. 11 (2021): 6474-6488.
J Wang, J Ding, O Delaire, and G Arya. "Atomistic Mechanisms Underlying Non-Arrhenius Ion Transport in Superionic Conductor AgCrSe2." ACS Applied Energy Materials 4, no. 7 (2021): 7157-7167.
J Pajak, G Arya, and DE Smith. "Biophysics of DNA Packaging." In Encyclopedia of Virology (Fourth Edition), 160-166. 4th ed. Elsevier 2021.
V Kumar, UH Ko, Y Zhou, J Hoque, G Arya, and S Varghese. "Microengineered Materials with Self‐Healing Features for Soft Robotics." Advanced Intelligent Systems 3, no. 7 (2021): 2100005.
Y Yang, Q Lu, C-M Huang, H Qian, Y Zhang, S Deshpande, G Arya, Y Ke, and S Zauscher. "Programmable site-specific functionalization of DNA origami with polynucleotide brushes." Angewandte Chemie International Edition 60, no. 43 (2021): 23241-23247.
D Wang, L Yu, C-M Huang, G Arya, S Chang, and Y Ke. "Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units." J Am Chem Soc 143, no. 5 (2021): 2256-2263.
BH-J Lee, NA Kotov, and G Arya. "Reconfigurable Chirality of DNA-Bridged Nanorod Dimers." Acs Nano (2021).
M Woodson, J Pajak, BP Mahler, W Zhao, W Zhang, G Arya, MA White, PJ Jardine, and MC Morais. "A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA." Science Advances 7, no. 19 (2021).
J Pajak, R Atz, BJ Hilbert, MC Morais, BA Kelch, PJ Jardine, and G Arya. "Viral packaging ATPases utilize a glutamate switch to couple ATPase activity and DNA translocation." Proc Natl Acad Sci U S A 118, no. 17 (2021).
2020
BH-J Lee, and G Arya. "Analytical van der Waals interaction potential for faceted nanoparticles." Nanoscale Horizons 5, no. 12 (2020): 1628-1642.
J Ding, JL Niedziela, D Bansal, J Wang, X He, AF May, G Ehlers, DL Abernathy, A Said, A Alatas et al. "Anharmonic lattice dynamics and superionic transition in AgCrSe2." Proceedings of the National Academy of Sciences of the United States of America 117, no. 8 (2020): 201913916.
D Meluzzi, and G Arya. "Computational Approaches for Inferring 3D Conformations of Chromatin from Chromosome Conformation Capture Data." Methods (San Diego, Calif.) 181-182 (2020): 24-34.
M DeLuca, Z Shi, CE Castro, and G Arya. "Dynamic DNA nanotechnology: toward functional nanoscale devices." Nanoscale Horizons 5, no. 2 (2020): 182-201.
Z Shi, and G Arya. "Free energy landscape of salt-actuated reconfigurable DNA nanodevices." Nucleic Acids Research 48, no. 2 (2020): 548-560.
J Wang, BH-J Lee, and G Arya. "Kinetically assembled binary nanoparticle networks." Nanoscale 12, no. 8 (2020): 5091-5102.
2019
D Ortiz, D delToro, M Ordyan, J Pajak, J Sippy, A Catala, C-S Oh, A Vu, G Arya, M Feiss et al. "Evidence that a catalytic glutamate and an 'Arginine Toggle' act in concert to mediate ATP hydrolysis and mechanochemical coupling in a viral DNA packaging motor." Nucleic Acids Research 47, no. 3 (2019): 1404-1415.
D delToro, D Ortiz, M Ordyan, J Pajak, J Sippy, A Catala, C-S Oh, A Vu, G Arya, DE Smith et al. "Functional Dissection of a Viral DNA Packaging Machine's Walker B Motif." Journal of Molecular Biology 431, no. 22 (2019): 4455-4474.
T-Y Tang, Y Zhou, and G Arya. "Interfacial Assembly of Tunable Anisotropic Nanoparticle Architectures." ACS Nano 13, no. 4 (2019): 4111-4123.
J-J Song, R Bhattacharya, H Kim, J Chang, T-Y Tang, H Guo, SK Ghosh, Y Yang, Z Jiang, H Kim et al. "One-Dimensional Anomalous Diffusion of Gold Nanoparticles in a Polymer Melt." Physical Review Letters 122, no. 10 (2019).

Pages