Publications

Found 95 results
Type [ Year(Asc)]
2022
BH-J Lee, and G Arya. "Assembly mechanism of surface-functionalized nanocubes." Nanoscale 14, no. 10 (2022): 3917-3928.
S Sensale, P Sharma, and G Arya. "Binding kinetics of harmonically confined random walkers." Physical Review. E 105, no. 4 (2022).
C Zhou, D Yang, S Sensale, P Sharma, D Wang, L Yu, G Arya, Y Ke, and P Wang. "A bistable and reconfigurable molecular system with encodable bonds." Science Advances 8, no. 46 (2022).
Q Tang, S Sensale, C Bond, A Qiao, S Hugelier, A Arab, G Arya, and M Lakadamyali. "Detyrosination enrichment on microtubule subsets is established by the interplay between a stochastically-acting enzyme and microtubule stability." (2022).
Y Zhou, and G Arya. "Discovery of two-dimensional binary nanoparticle superlattices using global Monte Carlo optimization." Nature Communications 13, no. 1 (2022).
K Barcus, P-A Lin, Y Zhou, G Arya, and SM Cohen. "Influence of Polymer Characteristics on the Self-Assembly of Polymer-Grafted Metal–Organic Framework Particles." Acs Nano 16, no. 11 (2022): 18168-18177.
J Pajak, and G Arya. "Molecular Dynamics of DNA Translocation by FtsK." Nucleic Acids Research 50, no. 15 (2022): 8459-8470.
V Simões, BK Cizubu, L Harley, Y Zhou, J Pajak, NA Snyder, J Bouvette, MJ Borgnia, G Arya, A Bartesaghi et al. "Redox-sensitive E2 Rad6 controls cellular response to oxidative stress via K63-linked ubiquitination of ribosomes." Cell Reports 39, no. 8 (2022): 110860.
Y Wang, S Sensale, M Pedrozo, C-M Huang, MG Poirier, G Arya, and CE Castro. "Steric Communication between Dynamic Components on DNA nanodevices." (2022).
M DeLuca, W Pfeifer, B Randoing, C-M Huang, M Poirier, C Castro, and G Arya. "Thermally Reversible Pattern Formation in Arrays of Molecular Rotors." (2022).
Y Zhou, T-Y Tang, BH-J Lee, and G Arya. "Tunable Orientation and Assembly of Polymer-Grafted Nanocubes at Fluid–Fluid Interfaces." Acs Nano 16, no. 5 (2022): 7457-7470.
2021
J Pajak, E Dill, E Reyes-Aldrete, MA White, BA Kelch, PJ Jardine, G Arya, and MC Morais. "Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor." Nucleic Acids Res 49, no. 11 (2021): 6474-6488.
J Wang, J Ding, O Delaire, and G Arya. "Atomistic Mechanisms Underlying Non-Arrhenius Ion Transport in Superionic Conductor AgCrSe2." ACS Applied Energy Materials 4, no. 7 (2021): 7157-7167.
J Pajak, G Arya, and DE Smith. "Biophysics of DNA Packaging." In Encyclopedia of Virology (Fourth Edition), 160-166. 4th ed. Elsevier 2021.
V Kumar, UH Ko, Y Zhou, J Hoque, G Arya, and S Varghese. "Microengineered Materials with Self‐Healing Features for Soft Robotics." Advanced Intelligent Systems 3, no. 7 (2021): 2100005.
Y Yang, Q Lu, C-M Huang, H Qian, Y Zhang, S Deshpande, G Arya, Y Ke, and S Zauscher. "Programmable site-specific functionalization of DNA origami with polynucleotide brushes." Angewandte Chemie International Edition 60, no. 43 (2021): 23241-23247.
D Wang, L Yu, C-M Huang, G Arya, S Chang, and Y Ke. "Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units." J Am Chem Soc 143, no. 5 (2021): 2256-2263.
BH-J Lee, NA Kotov, and G Arya. "Reconfigurable Chirality of DNA-Bridged Nanorod Dimers." Acs Nano 15, no. 8 (2021): 13547-13558.
M Woodson, J Pajak, BP Mahler, W Zhao, W Zhang, G Arya, MA White, PJ Jardine, and MC Morais. "A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA." Science Advances 7, no. 19 (2021).
J Pajak, R Atz, BJ Hilbert, MC Morais, BA Kelch, PJ Jardine, and G Arya. "Viral packaging ATPases utilize a glutamate switch to couple ATPase activity and DNA translocation." Proc Natl Acad Sci U S A 118, no. 17 (2021).
2020
BH-J Lee, and G Arya. "Analytical van der Waals interaction potential for faceted nanoparticles." Nanoscale Horizons 5, no. 12 (2020): 1628-1642.
J Ding, JL Niedziela, D Bansal, J Wang, X He, AF May, G Ehlers, DL Abernathy, A Said, A Alatas et al. "Anharmonic lattice dynamics and superionic transition in AgCrSe2." Proceedings of the National Academy of Sciences of the United States of America 117, no. 8 (2020): 201913916.
D Meluzzi, and G Arya. "Computational Approaches for Inferring 3D Conformations of Chromatin from Chromosome Conformation Capture Data." Methods (San Diego, Calif.) 181-182 (2020): 24-34.
M DeLuca, Z Shi, CE Castro, and G Arya. "Dynamic DNA nanotechnology: toward functional nanoscale devices." Nanoscale Horizons 5, no. 2 (2020): 182-201.
Z Shi, and G Arya. "Free energy landscape of salt-actuated reconfigurable DNA nanodevices." Nucleic Acids Research 48, no. 2 (2020): 548-560.

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