Publications
Model Accounting for the Effects of Pulling-Device Stiffness in the Analyses of Single-Molecule Force Measurements." Physical Review Letters 104, no. 10 (2010).
"Modelling the morphology and thermomechanical behaviour of low-bandgap conjugated polymers and bulk heterojunction films." Energy Environ. Sci. 10, no. 2 (2017): 558-569.
"Models for recovering the energy landscape of conformational transitions from single-molecule pulling experiments." Molecular Simulation 42, no. 13 (2016): 1102-1115.
"Molecular Dynamics of DNA Translocation by FtsK." Nucleic Acids Research (2022).
"Molecular interactions and residues involved in force generation in the T4 viral DNA packaging motor." Journal of Molecular Biology 426, no. 24 (2014): 4002-4017.
"Molecular mechanical properties of short-sequence peptide enzyme mimics." Journal of Biomolecular Structure & Dynamics 34, no. 3 (2016): 463-474.
"Molecular modeling of shear-induced alignment of cylindrical micelles." Computer Physics Communications 169, no. 1-3 (2005): 262-266.
"Molecular Simulations of Knudsen Wall-slip: Effect of Wall Morphology." Molecular Simulation 29, no. 10-11 (2003): 697-709.
"Monte Carlo simulation and molecular theory of tethered polyelectrolytes." The Journal of Chemical Physics 126, no. 24 (2007): 244902.
"Monte Carlo study of shear-induced alignment of cylindrical micelles in thin films." Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 70, no. 3 (2004).
"Nanofiber-Based Total Internal Reflection Microscopy for Characterizing Colloidal Systems at the Microscale." The Journal of Physical Chemistry C 122, no. 38 (2018): 22114-22124.
"One-Dimensional Anomalous Diffusion of Gold Nanoparticles in a Polymer Melt." Physical Review Letters 122, no. 10 (2019).
"Orientational phase behavior of polymer-grafted nanocubes." Nanoscale 11, no. 34 (2019): 15939-15957.
"Phase Transitions of Confined Lattice Homopolymers†." Journal of Physical Chemistry B 108, no. 21 (2004): 6809-6815.
"Predicting the Mechanical Properties of Organic Semiconductors Using Coarse-Grained Molecular Dynamics Simulations." Macromolecules 49, no. 7 (2016): 2886-2894.
"Pressure-enthalpy driven molecular dynamics for thermodynamic property calculation II: applications." Fluid Phase Equilibria 200, no. 1 (2002): 93-110.
"Programmable site-specific functionalization of DNA origami with polynucleotide brushes." Angewandte Chemie International Edition 60, no. 43 (2021): 23241-23247.
"Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units." J Am Chem Soc 143, no. 5 (2021): 2256-2263.
"Quantification of DNA cleavage specificity in Hi-C experiments." Nucleic Acids Research 44, no. 1 (2016): e4.
"Rapid self-healing hydrogels." Proceedings of the National Academy of Sciences of the United States of America 109, no. 12 (2012): 4383-4388.
"Reconfigurable Chirality of DNA-Bridged Nanorod Dimers." Acs Nano (2021).
"Recovering ensembles of chromatin conformations from contact probabilities." Nucleic Acids Research 41, no. 1 (2013): 63-75.
"Redox-sensitive E2 Rad6 controls cellular response to oxidative stress via K63-linked ubiquitination of ribosomes." Cell Reports 39, no. 8 (2022): 110860.
"Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model." Proceedings of the National Academy of Sciences of the United States of America 103, no. 44 (2006): 16236-16241.
"Self-orienting nanocubes for the assembly of plasmonic nanojunctions." Nature Nanotechnology 7, no. 7 (2012): 433-437.
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