Publications

Found 72 results
Type [ Year(Asc)]
2010
A Maitra, and G Arya. "Model Accounting for the Effects of Pulling-Device Stiffness in the Analyses of Single-Molecule Force Measurements." Physical Review Letters 104, no. 10 (2010).
G Arya, A Maitra, and SA Grigoryev. "A structural perspective on the where, how, why, and what of nucleosome positioning." Journal of Biomolecular Structure & Dynamics 27, no. 6 (2010): 803-820.
I V. Dobrovolskaia, M Kenward, and G Arya. "Twist propagation in dinucleosome arrays." Biophysical Journal 99, no. 10 (2010): 3355-3364.
2009
G Arya. "Energetic and Entropic Forces Governing the Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 113, no. 48 (2009): 15760-15770.
SA Grigoryev, G Arya, S Correll, CL Woodcock, and T Schlick. "Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions." Proceedings of the National Academy of Sciences of the United States of America 106, no. 32 (2009): 13317-13322.
G Arya, and T Schlick. "A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments." The Journal of Physical Chemistry A 113, no. 16 (2009): 4045-4059.
2007
G Arya, and T Schlick. "Efficient global biopolymer sampling with end-transfer configurational bias Monte Carlo." The Journal of Chemical Physics 126, no. 4 (2007): 044107.
OJ Hehmeyer, G Arya, AZ Panagiotopoulos, and I Szleifer. "Monte Carlo simulation and molecular theory of tethered polyelectrolytes." The Journal of Chemical Physics 126, no. 24 (2007): 244902.
2006
G Arya, Q Zhang, and T Schlick. "Flexible histone tails in a new mesoscopic oligonucleosome model." Biophysical Journal 91, no. 1 (2006): 133-150.
G Arya, and T Schlick. "Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model." Proceedings of the National Academy of Sciences of the United States of America 103, no. 44 (2006): 16236-16241.
2005
G Arya, and AZ Panagiotopoulos. "Impact of Branching on the Phase Behavior of Polymers." Macromolecules 38, no. 25 (2005): 10596-10604.
G Arya, and AZ Panagiotopoulos. "Log-rolling micelles in sheared amphiphilic thin films." Physical Review Letters 95, no. 18 (2005).
G Arya, and AZ Panagiotopoulos. "Molecular modeling of shear-induced alignment of cylindrical micelles." Computer Physics Communications 169, no. 1-3 (2005): 262-266.
G Arya, J Rottler, AZ Panagiotopoulos, DJ Srolovitz, and PM Chaikin. "Shear Ordering in Thin Films of Spherical Block Copolymer." Langmuir : the Acs Journal of Surfaces and Colloids 21, no. 24 (2005): 11518-11527.
2004
G Arya, and AZ Panagiotopoulos. "Monte Carlo study of shear-induced alignment of cylindrical micelles in thin films." Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 70, no. 3 (2004).
OJ Hehmeyer, G Arya, and AZ Panagiotopoulos. "Phase Transitions of Confined Lattice Homopolymers†." Journal of Physical Chemistry B 108, no. 21 (2004): 6809-6815.
2003
G Arya, H-C Chang, and EJ Maginn. "Knudsen Diffusivity of a Hard Sphere in a Rough Slit Pore." Physical Review Letters 91, no. 2 (2003): 026102/1-026102/4.
G Arya, H-C Chang, and EJ Maginn. "Molecular Simulations of Knudsen Wall-slip: Effect of Wall Morphology." Molecular Simulation 29, no. 10-11 (2003): 697-709.
2002
LI Kioupis, G Arya, and EJ Maginn. "Pressure-enthalpy driven molecular dynamics for thermodynamic property calculation II: applications." Fluid Phase Equilibria 200, no. 1 (2002): 93-110.
2001
G Arya, H-C Chang, and EJ Maginn. "A critical comparison of equilibrium, non-equilibrium and boundary-driven molecular dynamics techniques for studying transport in microporous materials." The Journal of Chemical Physics 115, no. 17 (2001): 8112-8124.
G Arya, EJ Maginn, and H-C Chang. "Effect of the Surface Energy Barrier on Sorbate Diffusion in AlPO4-5." Journal of Physical Chemistry B 105, no. 14 (2001): 2725-2735.
2000
G Arya, EJ Maginn, and H-C Chang. "Efficient viscosity estimation from molecular dynamics simulation via momentum impulse relaxation." The Journal of Chemical Physics 113, no. 6 (2000): 2079-2087.

Pages