Publications

Found 89 results
Type [ Year(Asc)]
2013
D Meluzzi, and G Arya. "Recovering ensembles of chromatin conformations from contact probabilities." Nucleic Acids Research 41, no. 1 (2013): 63-75.
2012
D Meluzzi, KE Olson, GF Dolan, G Arya, and UF Muller. "Computational prediction of efficient splice sites for trans-splicing ribozymes." Rna (New York, N.Y.) 18, no. 3 (2012): 590-602.
I V. Dobrovolskaia, and G Arya. "Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions." Biophysical Journal 103, no. 5 (2012): 989-998.
K Holzworth, G Williams, B Arman, Z Guan, G Arya, and S Nemat-Nasser. "Polyurea with hybrid polymer grafted nanoparticles: A parametric study." In ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE), 719-720. Vol. 8. 2012.
A Phadke, C Zhang, B Arman, C-C Hsu, RA Mashelkar, AK Lele, MJ Tauber, G Arya, and S Varghese. "Rapid self-healing hydrogels." Proceedings of the National Academy of Sciences of the United States of America 109, no. 12 (2012): 4383-4388.
B Gao, G Arya, and AR Tao. "Self-orienting nanocubes for the assembly of plasmonic nanojunctions." Nature Nanotechnology 7, no. 7 (2012): 433-437.
B Arman, AS Reddy, and G Arya. "Viscoelastic Properties and Shock Response of Coarse-Grained Models of Multiblock versus Diblock Copolymers: Insights into Dissipative Properties of Polyurea." Macromolecules 45, no. 7 (2012): 3247-3255.
2011
HL Lim, JC Chuang, T Tran, A Aung, G Arya, and S Varghese. "Dynamic Electromechanical Hydrogel Matrices for Stem Cell Culture." Advanced Functional Materials 21, no. 1 (2011): 55-63.
R Ayala, C Zhang, D Yang, Y Hwang, A Aung, SS Shroff, FT Arce, R Lal, G Arya, and S Varghese. "Engineering the cell-material interface for controlling stem cell adhesion, migration, and differentiation." Biomaterials 32, no. 15 (2011): 3700-3711.
BVS Iyer, M Kenward, and G Arya. "Hierarchies in eukaryotic genome organization: Insights from polymer theory and simulations." Bmc Biophysics 4, no. 1 (2011): 8.
A Maitra, and G Arya. "Influence of pulling handles and device stiffness in single-molecule force spectroscopy." Physical Chemistry Chemical Physics : Pccp 13, no. 5 (2011): 1836-1842.
BVS Iyer, and G Arya. "Lattice animal model of chromosome organization." Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 86, no. 1 (2011).
D Yang, and G Arya. "Structure and binding of the H4 histone tail and the effects of lysine 16 acetylation." Physical Chemistry Chemical Physics : Pccp 13, no. 7 (2011): 2911-2921.
2010
D Meluzzi, DE Smith, and G Arya. "Biophysics of knotting." Annual Review of Biophysics 39 (2010): 349-366.
G Arya. "Chain Stiffness and Attachment-Dependent Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 114, no. 48 (2010): 15886-15896.
N Sangaj, P Kyriakakis, D Yang, C-W Chang, G Arya, and S Varghese. "Heparin mimicking polymer promotes myogenic differentiation of muscle progenitor cells." Biomacromolecules 11, no. 12 (2010): 3294-3300.
A Maitra, and G Arya. "Model Accounting for the Effects of Pulling-Device Stiffness in the Analyses of Single-Molecule Force Measurements." Physical Review Letters 104, no. 10 (2010).
G Arya, A Maitra, and SA Grigoryev. "A structural perspective on the where, how, why, and what of nucleosome positioning." Journal of Biomolecular Structure & Dynamics 27, no. 6 (2010): 803-820.
I V. Dobrovolskaia, M Kenward, and G Arya. "Twist propagation in dinucleosome arrays." Biophysical Journal 99, no. 10 (2010): 3355-3364.
2009
G Arya. "Energetic and Entropic Forces Governing the Attraction between Polyelectrolyte-Grafted Colloids." Journal of Physical Chemistry B 113, no. 48 (2009): 15760-15770.
SA Grigoryev, G Arya, S Correll, CL Woodcock, and T Schlick. "Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions." Proceedings of the National Academy of Sciences of the United States of America 106, no. 32 (2009): 13317-13322.
G Arya, and T Schlick. "A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments." The Journal of Physical Chemistry A 113, no. 16 (2009): 4045-4059.
2007
G Arya, and T Schlick. "Efficient global biopolymer sampling with end-transfer configurational bias Monte Carlo." The Journal of Chemical Physics 126, no. 4 (2007): 044107.
OJ Hehmeyer, G Arya, AZ Panagiotopoulos, and I Szleifer. "Monte Carlo simulation and molecular theory of tethered polyelectrolytes." The Journal of Chemical Physics 126, no. 24 (2007): 244902.
2006
G Arya, Q Zhang, and T Schlick. "Flexible histone tails in a new mesoscopic oligonucleosome model." Biophysical Journal 91, no. 1 (2006): 133-150.

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