Publications
Colloidal Plasmonic Nanocomposites: From Fabrication to Optical Function." Chemical Reviews 118, no. 6 (2018): 3100-3120.
"Nanofiber-Based Total Internal Reflection Microscopy for Characterizing Colloidal Systems at the Microscale." The Journal of Physical Chemistry C 122, no. 38 (2018): 22114-22124.
"Single-molecule FRET reveals multiscale chromatin dynamics modulated by HP1α." Nature Communications 9, no. 1 (2018).
"Anisotropic Three-Particle Interactions between Spherical Polymer-Grafted Nanoparticles in a Polymer Matrix." Macromolecules 50, no. 3 (2017): 1167-1183.
"Conformational Dynamics of Mechanically Compliant DNA Nanostructures from Coarse-Grained Molecular Dynamics Simulations." Acs Nano 11, no. 5 (2017): 4617-4630.
"Modelling the morphology and thermomechanical behaviour of low-bandgap conjugated polymers and bulk heterojunction films." Energy Environ. Sci. 10, no. 2 (2017): 558-569.
"Dynamics of nanoparticle assembly from disjointed images of nanoparticle-polymer composites." Physical Review. E 93, no. 2 (2016).
"Free-energy landscape of mono- and dinucleosomes: Enhanced rotational flexibility of interconnected nucleosomes." Physical Review. E 93, no. 3 (2016).
"Metallic Nanoislands on Graphene as Highly Sensitive Transducers of Mechanical, Biological, and Optical Signals." Nano Letters 16, no. 2 (2016): 1375-1380.
"Models for recovering the energy landscape of conformational transitions from single-molecule pulling experiments." Molecular Simulation 42, no. 13 (2016): 1102-1115.
"Molecular mechanical properties of short-sequence peptide enzyme mimics." Journal of Biomolecular Structure & Dynamics 34, no. 3 (2016): 463-474.
"Predicting the Mechanical Properties of Organic Semiconductors Using Coarse-Grained Molecular Dynamics Simulations." Macromolecules 49, no. 7 (2016): 2886-2894.
"Quantification of DNA cleavage specificity in Hi-C experiments." Nucleic Acids Research 44, no. 1 (2016): e4.
"Zinc finger protein binding to DNA: an energy perspective using molecular dynamics simulation and free energy calculations on mutants of both zinc finger domains and their specific DNA bases." Journal of Biomolecular Structure & Dynamics 34, no. 5 (2016): 919-934.
"Automated quantitative image analysis of nanoparticle assembly." Nanoscale 7, no. 21 (2015): 9793-9805.
"Biomimetic Material-Assisted Delivery of Human Embryonic Stem Cell Derivatives for Enhanced In Vivo Survival and Engraftment." Acs Biomaterials Science & Engineering 1, no. 1 (2015): 7-12.
"Computationally Guided Assembly of Oriented Nanocubes by Modulating Grafted Polymer–Surface Interactions." Nano Letters 15, no. 11 (2015): 7377-7382.
"Efficient estimation of contact probabilities from inter-bead distance distributions in simulated polymer chains." Journal of Physics. Condensed Matter : an Institute of Physics Journal 27, no. 6 (2015): 064120.
"Micromotor-based on–off fluorescence detection of sarin and soman simulants." Chemical Communications 51, no. 56 (2015): 11190-11193.
"Viscoelastic Properties of Polymer-Grafted Nanoparticle Composites from Molecular Dynamics Simulations." Macromolecules 48, no. 4 (2015): 1240-1255.
"Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor." Nature Communications 5 (2014).
"Molecular interactions and residues involved in force generation in the T4 viral DNA packaging motor." Journal of Molecular Biology 426, no. 24 (2014): 4002-4017.
"Simultaneous Iterative Boltzmann Inversion for Coarse-Graining of Polyurea." Macromolecules 47, no. 10 (2014): 3378-3389.
"Torsional behavior of chromatin is modulated by rotational phasing of nucleosomes." Nucleic Acids Research 42, no. 15 (2014): 9691-9699.
"Evolutionary dynamics and information hierarchies in biological systems." Annals of the New York Academy of Sciences 1305, no. 1 (2013): 1-17.
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